miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies



ABOUT THIS RECORD

ID: MNEST039378
species: Picea abies
miRNA family: MIR395
source: miRBase, original name: pab-MIR395 (MI0016121)

Taxonomy by NCBI:
Picea abies Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
CTGAAGTGTTTGGAGGAACTT

miRNA*
GTTCCTTCAATCACTTCGCCG

mismatches: 2
bulges: 0

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pre-miRNA
CTCACAGCTGGTTCTCAATGCCGGGAGTTCCTTCAATCACTTCGCCGAATCCGAAAGCATTTCACTGAAGTGTTTGGAGGAACTTCGGGCGTCACTGAAC
TGC


dot-bracket secondary structure
......((.(((((...(((((.(((((((((((((.(((((((..(((..(....)...)))..))))))).))))))))))))).)))))....))))
)))



SIMILARITIES
miRBase aly-MIR395i: 0.00008

PMRD no hits

microPC miR395: 2e-27
UniProt no hits

RFAM no hits

Identical with: miR395 from microPC (MNEST046453)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: cloned

references

[1] Yakovlev IA, Fossdal CG, Johnsen O, New Phytol. 187:1154-1169(2010)., "MicroRNAs, the epigenetic memory and climatic adaptation in Norway spruce"




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